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dragen variant calling algorithm  (Illumina Inc)


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    Structured Review

    Illumina Inc dragen variant calling algorithm
    Dragen Variant Calling Algorithm, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/variant+calling+algorithms/somatic+variant+caller+algorithm/pm40305610-213-9-9
    Average 90 stars, based on 1 article reviews
    dragen variant calling algorithm - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Concentration Assay:

    Article Title: The Need for Standardization in Next-Generation Sequencing Studies for Classic Hodgkin Lymphoma: A Systematic Review
    Article Snippet: Adjusted chemotherapy depending on the mutational profile , ARID1A and KTM2D commonly mutated in FL and cHL. There is a secondary clonal evolution after transdifferentiation , LymphoTrack and Vidijil software , Illumina, San Diego, CA, USA , FFPE and fresh frozen tissue , 3 sequential lymphomas for clonality and 5 cases for targeted NGS , To evaluate transdifferentiation between cHL and follicular lymphoma (FL) , Trecourt et al., (2021) [ ] . .. ctDNA as a feasible strategy for genotyping and monitoring , Variants in SOCS1 (28%), IGLL5 (36%), TNFAIP3 (23%), GNA13 (23%) and STAT6 (21%). Poor prognosis features correlated with ctDNA concentration , VarScan2 and DGCaller algorithms for variant calling. RefSeq database for functional annotation , Illumina, San Diego, CA, USA , ctDNA , 60 cases of newly diagnosed cHL , Identify cHL somatic variants , Alcoceba et al., (2021) [ ] . .. NGS as a sensitive and specific assay for clonality analysis , Clonality detection rates: fresh frozen: NGS (88%) vs. BIOMED-2 (63%); FFPE tissue: NGS (56%) vs. BIOMED-2 (20%) , ARResT/Interrogate pipeline , Ion Torrent TM , Thermo Fisher, Waltham, MA, USA , FFPE and fresh frozen tissue , Duplicated analysis (PCR and NGS) of 16 primary cHL cases , Compare NGS and BIOMED-2/EuroClonality for IG gene rearrangement , Van Bladel et al., (2021) [ ] .

    Variant Assay:

    Article Title: The Need for Standardization in Next-Generation Sequencing Studies for Classic Hodgkin Lymphoma: A Systematic Review
    Article Snippet: Adjusted chemotherapy depending on the mutational profile , ARID1A and KTM2D commonly mutated in FL and cHL. There is a secondary clonal evolution after transdifferentiation , LymphoTrack and Vidijil software , Illumina, San Diego, CA, USA , FFPE and fresh frozen tissue , 3 sequential lymphomas for clonality and 5 cases for targeted NGS , To evaluate transdifferentiation between cHL and follicular lymphoma (FL) , Trecourt et al., (2021) [ ] . .. ctDNA as a feasible strategy for genotyping and monitoring , Variants in SOCS1 (28%), IGLL5 (36%), TNFAIP3 (23%), GNA13 (23%) and STAT6 (21%). Poor prognosis features correlated with ctDNA concentration , VarScan2 and DGCaller algorithms for variant calling. RefSeq database for functional annotation , Illumina, San Diego, CA, USA , ctDNA , 60 cases of newly diagnosed cHL , Identify cHL somatic variants , Alcoceba et al., (2021) [ ] . .. NGS as a sensitive and specific assay for clonality analysis , Clonality detection rates: fresh frozen: NGS (88%) vs. BIOMED-2 (63%); FFPE tissue: NGS (56%) vs. BIOMED-2 (20%) , ARResT/Interrogate pipeline , Ion Torrent TM , Thermo Fisher, Waltham, MA, USA , FFPE and fresh frozen tissue , Duplicated analysis (PCR and NGS) of 16 primary cHL cases , Compare NGS and BIOMED-2/EuroClonality for IG gene rearrangement , Van Bladel et al., (2021) [ ] .

    Functional Assay:

    Article Title: The Need for Standardization in Next-Generation Sequencing Studies for Classic Hodgkin Lymphoma: A Systematic Review
    Article Snippet: Adjusted chemotherapy depending on the mutational profile , ARID1A and KTM2D commonly mutated in FL and cHL. There is a secondary clonal evolution after transdifferentiation , LymphoTrack and Vidijil software , Illumina, San Diego, CA, USA , FFPE and fresh frozen tissue , 3 sequential lymphomas for clonality and 5 cases for targeted NGS , To evaluate transdifferentiation between cHL and follicular lymphoma (FL) , Trecourt et al., (2021) [ ] . .. ctDNA as a feasible strategy for genotyping and monitoring , Variants in SOCS1 (28%), IGLL5 (36%), TNFAIP3 (23%), GNA13 (23%) and STAT6 (21%). Poor prognosis features correlated with ctDNA concentration , VarScan2 and DGCaller algorithms for variant calling. RefSeq database for functional annotation , Illumina, San Diego, CA, USA , ctDNA , 60 cases of newly diagnosed cHL , Identify cHL somatic variants , Alcoceba et al., (2021) [ ] . .. NGS as a sensitive and specific assay for clonality analysis , Clonality detection rates: fresh frozen: NGS (88%) vs. BIOMED-2 (63%); FFPE tissue: NGS (56%) vs. BIOMED-2 (20%) , ARResT/Interrogate pipeline , Ion Torrent TM , Thermo Fisher, Waltham, MA, USA , FFPE and fresh frozen tissue , Duplicated analysis (PCR and NGS) of 16 primary cHL cases , Compare NGS and BIOMED-2/EuroClonality for IG gene rearrangement , Van Bladel et al., (2021) [ ] .



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    Main characteristics of the studies included in the present systematic review.

    Journal: Diagnostics

    Article Title: The Need for Standardization in Next-Generation Sequencing Studies for Classic Hodgkin Lymphoma: A Systematic Review

    doi: 10.3390/diagnostics12040963

    Figure Lengend Snippet: Main characteristics of the studies included in the present systematic review.

    Article Snippet: ctDNA as a feasible strategy for genotyping and monitoring , Variants in SOCS1 (28%), IGLL5 (36%), TNFAIP3 (23%), GNA13 (23%) and STAT6 (21%). Poor prognosis features correlated with ctDNA concentration , VarScan2 and DGCaller algorithms for variant calling. RefSeq database for functional annotation , Illumina, San Diego, CA, USA , ctDNA , 60 cases of newly diagnosed cHL , Identify cHL somatic variants , Alcoceba et al., (2021) [ ] .

    Techniques: Sequencing, Software, Concentration Assay, Variant Assay, Functional Assay, Control, Biomarker Discovery, Isolation, Selection